Valgumotiivid ja valguperekonnad - PowerPoint PPT Presentation
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Valgumotiivid ja valguperekonnad
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BLOCKS http://www.blocks.fhcrc.org/ eMOTIF http://elucidate.stanford.edu/emotif ... SCOP (Structural Classification of Proteins) http://scop.mrc-lmb.cam.ac.uk/scop ... – PowerPoint PPT presentation
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Title: Valgumotiivid ja valguperekonnad
1
Valgumotiivid ja valguperekonnad
- KOIT ARRO
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Sequence-motif meetodid
- BLOCKS http//www.blocks.fhcrc.org/
- eMOTIF http//elucidate.stanford.edu/emotif/
- InterPro http//www.ebi.ac.uk/interpro/
- Pfam http//www.sanger.ac.uk/Pfam/
- PRINTS http//www.biochem.ucl.ac.uk/bsm/dbbrow
ser/PRINTS/PRINTS.html - PROSITE http//www.expasy.ch/prosite/
- SMART http//SMART.embl-heidelberg.de/
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Sequence-cluster andmebaasid
- CluSTr http//www.ebi.ac.uk/clustr/
- DOMO http//www.infobiogen.fr/services/domo
- PIR-ALN http//pir.georgetown.edu/pirwww/dbinfo/p
iraln.html - ProClass http//pir.georgetown.edu/gfserver/procl
ass.html - ProDom http//www.toulouse.inra.fr/prodom.html
- Protein Information Resource (PIR)
http//pir.georgetown.edu/pirwww/pirhome.shtm
l - PROT-FAM http//pir.georgetown.edu/pirwww/dbinfo/p
rotfam.html - ProtoMap http//www.protomap.cs.huji.ac.il/
- SBASE http//sbase.abc.hu/sbase
- SYSTERS http//www.dkfz-heidelberg.de/tbi/service
s/cluster/systersform
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Structural alignment and cluster databases
- Protein Structure Classification (CATH)
http//www.biochem.ucl.ac.uk/bsm/cath/ - Dali Domain Dictionary (DDD)
- http//www.embl-ebi.ac.uk/dali/domain/
- Families of Structurally Similar Proteins (FSSP)
http//www.ebi.ac.uk/dali/fssp/ - Homology-derived Secondary Structure of Proteins
(HSSP) http//www.sander.ebi.ac.uk/hssp/ - I-sites library http//isites.bio.rpi.edu/
- Protein Data Bank (PDB)
- http//pdb-browsers.ebi.ac.uk//index.shtml
- SCOP (Structural Classification of Proteins)
http//scop.mrc-lmb.cam.ac.uk/scop/
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