Title: The University of New Mexico
1The University of New Mexico The Office of
Animal Care and Compliance
- present
- Basic Biomethodology for Laboratory Rats
- A learning module developed and presented by the
OACC
2Introduction
- This module was developed to assist you in
becoming proficient in performing common
techniques in the rat
3General Information
- We all have an ethical responsibility to animals
in terms of minimizing pain and distress - This can be accomplished, in part, by using
proper animal handling and experimental
techniques - The PHS requires that animal care and use is
based on the Guide for the Care and Use of
Laboratory Animals - Personnel caring for animals should be
appropriately trained
4Entrance Procedures
- Access to most UNM animal facilities is by
card-key - Sharing of card-keys could result in termination
of your access privileges - Animal users are not provided with access to the
animal facility until all training requirements
are met
5Personal Protective Equipment
- All animal facilities require some level of
protective clothing in order to protect the
animals housed within from contaminants that may
enter the facility via the personnel and to
protect the personnel from exposure to animal
allergens or other potential hazards
6Examples of Protective Clothing
- Lab Coats
- Jumpsuits
- Shoe Covers
- Hair Bonnets
- Masks
- Gloves
7Animal Records
- All animals used in research require some kind of
record and identification, even if it is only a
cage card
- Cage cards should include protocol number,
investigator, species, strain, age/wt, sex,
vendor, and date received
8Microisolator Cage Technique
- Some facilities require that all animal cages be
opened inside a biosafety cabinet - The cages are sprayed with a disinfectant prior
to placing them in the cabinet and prior to
removing them from the cabinet - Hands are sprayed with disinfectant prior to
handling the cage and again prior to handling the
cage contents
9Microisolator Cage Technique
- Sometimes you must manipulate the cages on a cart
or bench top - The cages and gloved hands are sprayed with a
disinfectant - The microisolator lid is removed and placed
inverted on the cart or bench top - Hands are sprayed with disinfectant again
- The wire bar lid is removed and placed on the
inverted microisolator top
10Assessing the General Health of Rats
- A brief assessment of the health of every animal
should be conducted prior to performing any
technical procedures
- The animal should be observed for signs of
illness including - Ocular or nasal discharge
- Rough hair coat
- Abnormal posture
- Uterine, rectal or penile prolapse
- Limb abnormalities
- Malocclusion
- Dehydration
- Dystocia
- Abnormal behavior
- Example of ulcerative podododermatitis
11Assessing the General Health of Rats
- Any signs of pain or distress should be reported
immediately - Observe the feed and water supplies to ensure
that there is evidence that the animal has been
eating and drinking - Group-housed animals will often fight, they
should be observed closely for fight wounds and
separated immediately if fighting is noted - Barbering may also be seen in group-housed rats
of both sexes - The muzzle and other areas of the body are shaved
by the dominant rat in the cage
12Sexing rats
Notice the greater distance in the male
Notice the more prominent hairless strip in the
female
- It is important that every animal handler be
properly trained to distinguish between male and
female rats - The anogenital space is almost twice as long in
the male as it is in the female - It is difficult to differentiate the sex of
neonates it is sometimes helpful to compare two
animals side by side
13Rat Behavior
- Rats are nocturnal
- Rats exhibit strong burrowing, gnawing and
nesting behavior - Rats should be provided with bedding materials
that encourage this behavior - Other environmental enrichment devices should
also be used as appropriate, but must be approved
by the Attending Veterinarian prior to use
14Restraint
- When attempting to restrain rats, sudden, jerky
moves should be avoided to decrease the
likelihood of being bitten - Approaching with gentle confidence is best
- Select the appropriate method of restraint for
the procedure you wish to perform - Restraint by the tail is intended for short-term
manipulations such as cage transfer
15Tail Restraint
- Notice how close to the base of the tail the
handler is
- Rats may be picked up by grasping the base of the
tail - Do not grasp the tip of the tail as this may
cause the skin to be stripped off - Never suspend a rat for long periods of time by
its tail
- Notice how the handler is supporting the weight
of the rat
16Two-Handed Restraint
- Using two-handed restraint or mechanical devices
is suggested for procedures requiring more than
momentary restraint - Restraining the rat by the two-handed method will
allow you to perform many technical procedures
such as examination, injection and blood
collection - There is a scruff and a thoracic variation of
this technique
17Scruff Restraint
- Restrain the rat by grasping it at the base of
the tail and placing it on a table or cart
- While grasping the tail with one hand, grasp the
nape or scruff of the neck with the other
- Be sure to grasp enough skin so that the animal
cannot turn its head to bite you
18Thoracic Restraint
- Restrain the rat by grasping it at the base of
the tail and placing it on a table or cart
- While grasping the tail with one hand, grasp the
rat around the thoracic area with the other do
not squeeze too tight or you could cause
breathing difficulties
- Be sure to keep the animals forelimbs above your
thumb and index finger as this will protect you
from being bitten
19Thoracic Restraint - Variation
- A variation of this method places the animals
head between the first and second fingers while
the forelimbs are held between the thumb and
forefinger, and the third and fourth fingers
- Again, care must be taken to hold the animal
tight enough to prevent it from biting you, yet
loose enough to prevent breathing difficulties
20Precautions
- Monitor the condition of the animal the entire
time it is restrained - Observe the breathing rate and color of the ears,
nose and oral cavity - Release the animal immediately if there are any
signs of gasping or change in coloring from pink
to blue
21Mechanical Restrainers
- Plexiglass restrainers are available from
different manufacturers in a variety of styles - They allow the user to have both hands free for
manipulation - Depending upon the type of device, the animal can
be placed in the restrainer either head or tail
first - Cage tops can also be used to restrain rats for
procedures on the tail
22Head-First Restrainers
- Grasp the rat by the base of the tail with one
hand and cover the restrainer with the other - Most rats, once they are shown the entrance to
the tunnel, will readily enter the restrainer
23Head-First Restrainers
- If the restrainer has a securing device, affix it
firmly to prevent the rat from exiting the
apparatus
24Tail-First Restrainers
- These are appropriate for such procedures as
tail-vein injections and blood collections - Grasp the rat by the base of the tail and slide
its hindquarters first into the restrainer - Use the slot as a tail guide
25Tail-First Restrainers
- Once the rat if fully in the restrainer, insert
the securing device to prevent the animal from
exiting the apparatus
26Identification Methods
- It is important to select the appropriate
identification method for your research purposes - This should be based upon the age of the animal,
the number of characters you wish to include, and
the duration of the experiment - You should record the identification information
on the cage card in the event that clarification
of the numbers or characters becomes necessary
for any reason
27Identification Methods
- Indelible markers can be used for short-term
identification - Ear-punches, microchips, and tattooing are all
permanent procedures - Ear tags can be long-term, but there is always a
chance they will become detached from the ear
28Temporary Identification
- Non-toxic, permanent markers can be used to
temporarily mark the fur, tail, or skin of the
animal - This ink usually lasts 3-4 days without the need
to remark
29Ear Punches
- Different types of ear punches are available
- Ear punches should be sterile prior to use
- Extra ear punches should always be available as
they become dull with repeated use
30Ear Punches
- Restrain the rat by the scruff using the method
described previously - The punch should be placed approximately 3mm from
the edge of the ear pinna - If the punch is placed to close to the edge it is
likely to tear and become difficult to read - You should also take care not to place the punch
too far towards the inside of the ear to avoid
injuring the animal - The tissue removed can also be used for genotyping
31Ear Punches
- Sanitize the ear punch between each cage of
animals with 70 ethanol - Chlorinated compounds will cause the punch to
become corroded
32Microchip Transponders
- Often called Pit Tagging, they are implanted
subcutaneously between the scapulae for permanent
identification of individual animals - Each microchip is encrypted with a unique,
non-replicable number and are read with a
portable, hand-held scanner
33Microchip Transponder
- To implant these chips, the rat must be briefly
anesthetized - The hair is removed from the insertion site by
shaving - The area is prepped with an iodophor, followed by
alcohol - The implantation needle, with the syringe
attached, is purchased in a sterile package - Make a tent from the loose skin at the implant
site
34Microchip Transponders
- Insert the needle subcutaneously, with the bevel
up, and depress the plunger
Note that the bevel is facing up
- Once the needle is removed the injection site
should be observed for bleeding - If bleeding is noted, apply pressure with a
sterile gauze pad, or a drop of super glue to the
entry site
35Tattooing
- Tattooing can be used on both neonates and adults
as a permanent method of identification - Anesthesia is not required, but can be used to
immobilize the animal - A tattoo device can be used to write numbers or
other characters on the tails of adult mice - It can also be used to tattoo the footpads of
both neonatal and adult mice
36Tattooing
- The use of tattoo equipment requires further
hands-on training - All tattoo equipment should be disinfected prior
to use and sterilized between animal rooms
37Ear Tags
- Ear tags are another means for identifying rats
- Ear tags can be imprinted by the manufacturer
with several digits or letters - Special attention should be given to the
placement of the ear tag - Improperly placed tags can become easily detached
from the ear, torn out when the rats fight, or
inadvertently become caught in the wire bar lid
38Ear Tags
- Restrain the rat as previously described
- Place a sterile ear tag into a sanitized ear tag
applicator
39Ear Tags
- Locate the proper position for placement (numbers
up) - Apply the tag to the base of the ear,
approximately 3mm from the edge of the pinna
- Do not apply the tag too close to the center of
the ear as this may cause inflammation,
necessitating removal of the tag - Do not apply the tag too close to the outer edge
of the pinna as this may cause the tag to become
entangled with the foot of the animal or in the
wire bar lid, causing it to become detached from
the ear
40Toe Clipping
- Toe clipping for identification is not
recommended - Toe clipping requires scientific justification
and approval of the IACUC - To clipping requires specific training in the
procedure by Animal Facility Staff
41Genotyping Tail Snips
- Most commonly, genotyping of rats is accomplished
by amputating a small portion of the distal tail - This is best performed when the pup is 10 15
days old - 5.0 mm or less of the distal tail is removed for
this procedure - The tail should be sprayed with a topical
hypothermic, or the animal may be anesthetized
42Genotyping Tail Snips
- A scalpel or scissors can be used to remove the
tissue - The instruments are steril at the beginning of
the procedure and sanitized between animals - You must assure that adequate hemostasis has been
achieved before returning the animal to its cage - Surgical glue, silver nitrate, or direct pressure
with a sterile pad can be used for this purpose - Note the tissue removed during ear punching can
be used for rapid screening of rats - You may also be able to use blood, hair, saliva,
or feces for genotyping consult with the
veterinarian
43Injections
- Various routes exist for injecting rats
- Discuss the appropriate route, volume, site and
needle selection with the veterinarian - All injections must be described in your approved
protocol - All injections must be performed using sterile
needles and syringes - A new needle and syringe should be used for each
cage of rats
44Intramuscular Injections - IM
- Regardless of the method used for IM injections,
it must be noted that the sciatic nerve runs
along the length of the femur - It is very important to avoid injuring this nerve
- This is best accomplished by pointing the needle
caudally rather than cranially, however, the
quadriceps muscle can be used by an experienced
person - It is imperative that the rat is properly
restrained either two handed with an assistant
injecting the animal, or using anesthesia - Swab the area with 70 ethanol before placing the
needle and aspirate to look for blood before
injecting
45Intramuscular Injections - IM
- Location of the sciatic nerve and target
injection site
46Intramuscular Injections - IM
- Have one person restrain the rat as described
earlier - The second person will secure the rear foot
nearest to the first persons lower thumb - Swab the area with 70 ethanol
- Insert the needle, bevel up, into the caudal
thigh at a 45 angle - Aspirate to ensure that you have not entered a
blood vessel then slowly inject the material
47Intramuscular Injections - IM
- You can perform the injection without anesthesia
but this is not recommended - Two people must be used for IM injections on
unanesthetized animals - One person restrains the rat, while the second
person performs the injection - The quadriceps can be used, but the caudal thigh
is recommended
48Subcutaneous Injections SC or SQ
- Restrain the rat with anesthesia or as described
earlier - A second person will use their thumb and
forefinger to make a tent of skin over the scruff - Prep the area with 70 ethanol
- Insert the needle, bevel up, at the base of the
tent - The needle should be inserted parallel to the
skin and should be directed toward the posterior
of the animal - Aspirate to ensure proper placement and inject
the material
49Intraperitoneal Injections IP
- Restrain the rat with anesthesia (preferred), or
by the scruff method or two-handed method using
two persons - Expose the ventral side of the animal
- Prep the site with 70 ethanol
- The sterile needle should be placed, bevel up, in
the lower right or left quadrant of the animals
abdomen - Insert the needle at a 30 angle
- Aspirate and inject the material
Anesthetized Animal
50Intravenous Injections IV
- Warm the rats tail in a bowl of warm water, or
under a heat lamp or other heating device - Be sure not to OVERHEAT the animal
- The temperature should not exceed 85 - 90 F at
the level of the animal - Remove the rat from the heat source immediately
should any change in respiration rate or
excessive salivation be observed
51Intravenous Injections IV
- Place the animal in a restraint device and
stabilize the tail between the thumb and
forefinger of the hand that will not be
manipulating the syringe - Or restrain the animal with an anesthetic and
stabilize the tail between the thumb and
forefinger of the hand that will not be
manipulating the syringe
52Intravenous Injections IV
- Prep the tail with 70 ethanol
- Attempt the injection starting at the middle or
slightly distal part of the tail - With the tail under tension insert the needle,
bevel up, approximately parallel to the vein and
insert the needle at lest 3 mm into the vein - DO NOT ASPIRATE this will cause the vein to
collapse - Inject the material in a slow, fluid motion
- You should see the vein blanch if the needle is
properly positioned - If any swelling at the injection site or
resistance to injection occurs, remove the needle
and reinsert it slightly above the initial site
53Intradermal Injections ID
- In order to perform ID injections the animal
should be anesthetized - Shave an injection site on the back of the animal
to remove the hair - Swab the site with 70 ethanol
- Insert the needle into the skin, bevel up,
holding the needle nearly parallel to the plane
of the skin - Do not aspirate
- Inject the material
- The volume of the injection should be limited to
50 µl per site to avoid tissue trauma - A properly performed ID injection should result
in a small, round skin welt
54Injection Sites and Volumes
- SQ in the Scruff Maximum 10 ml 20-25ga
needle - IM Caudal Thigh 0.3 ml 21ga needle
- IP Lower Ventral Quadrants 10 ml 20-25ga
needle - ID Lateral Abdomen/Thorax 0.05 ml 25-27ga
needle - IV Lateral Tail Vein 0.5 ml 20-25ga needle
55Oral Gavage
- Gavaging is used to dose an animal with a
specified volume of material directly into its
stomach - Only a specialized, commercially available gavage
needle should be used for this procedure
56Oral Gavage
- Fill the syringe with the appropriate volume of
material and attach the needle - Restrain the animal by the scruff
- Place the tip or ball of the needle into the
animals mouth
Make sure you measure the gavage needle for
proper length
57Oral Gavage
- Slide the tip gently past the back of the tongue
- The needle should slide easily down the esophagus
if properly placed - DO NOT FORCE!!!
- If any resistance is met, remove the needle and
reinsert - Do not aspirate once the needle is properly
placed administer the material
58Blood Collection
- It is important to select the proper method of
blood collection that corresponds to the volume
required for your research purposes - Some methods are intended for survival and others
are not - Consult the veterinarian for more information
Typical Blood Collection Sites Includes the
Following
- Retro-orbital Sinus Blood Collection Survival
- Submandibular Blood Collection Survival
- Lateral Tail Vein Blood Collection Survival
- Saphenous Vein - Survival
- Intracardiac Puncture Blood Collection
Non-Survival
59Retro-Orbital Sinus
- The retro-orbital sinus is the site located
behind the eye at the medial or lateral canthus - This venous sinus is located just underneath the
conjunctival membrane - No more than 2 of the blood volume should be
removed at one sampling - The blood volume of a rat is approximately 5-7
of body weight - A 250 gm rat has a circulating blood volume of
about 15-35 ml, so no more than 500 µl of blood
should be removed at one single bleeding
60Retro-Orbital Sinus
- Rats should not be bled more frequently than
every 3 weeks unless smaller samples are
collected - Animals should be anesthetized prior to
performing this procedure - Inhalant anesthetic is the preferred method
- It is imperative that the animal is properly
restrained or severe injury to the eye or
surrounding tissue could occur
61Retro-Orbital Sinus
- Restraining the animal by the scruff method and
tightening up slightly to the loose skin around
the neck will cause the eye to bulge slightly - Care should be given to ensure the animal does
not have difficulty in breathing
62Retro-Orbital Sinus
- With a gentle rotating motion, insert the tube
through the sinus membrane - Continue rotating the tube at the back of the
orbit until blood flows
63Retro-Orbital Sinus
- Collect the appropriate volume of blood
- Ensure good hemostasis with a clean gauze pad
before returning the animal to its cage - To become proficient at this technique,
additional training outside the scope of this
text is required - Please contact the ARF for appropriate training
64Submandibular
- Veins draining the eye and submandibular area
meet at the rear end of the cheek pouch - This provides a convenient and consistent source
of blood - Prepare the animal as outlined earlier for
retro-orbital blood collection
65Submandibular
- Using a 25ga needle, nick the submandibular vein
- Allow the blood to drip into a collection device
- Once the sample is collected, assure proper
hemostasis
66Lateral Tail Vein
- Tail nicking is a survival procedure that can be
used to collect up to 500 µl of blood from the
lateral tail veins - This method must be used with caution, as when
improperly performed, permanent tail injury or
amputation may occur - Prepare the animal as outlined earlier for tail
vein injections
67Lateral Tail Vein
- Using a 11 scalpel blade, gently nick the
lateral tail vein in the general area around the
midline of the tail - Start at least halfway down the tail so if there
is a problem, you can nick the tail above the
initial site and still obtain your blood sample - Allow the blood to flow into an appropriate
receptacle - Do not attempt to squeeze the tail or milk blood
from the tail this may cause tissue damage and
contamination of the blood sample - When the sample is collected, ensure good
hemostasis with a sterile gauze pad, surgical
glue, or silver nitrate
68Saphenous Vein
- The saphenous vein may also be used for blood
collection - Restrain and extend the hind leg applying gentle
downward pressure above the knee joint. - Wipe the shaved area with alcohol or sterile
lubricating gel and use a 25-gauge needle to
puncture the vein (The vein is next to the dark
highlight in the picture below). - If done correctly a drop of blood forms
immediately at the puncture site and can be
collected in a micro-hematocrit tube.
69Saphenous Vein
- If collecting blood from the right leg, the fold
of skin between the abdomen and cranial thigh
surface is used to fix the leg - The hair is then removed from the outer surface
of the fixed leg - The vein should now be visible on the surface of
the thigh - Prep the area with 70 ethanol
- A 25ga needle is held almost parallel to the
saphenous vein the vessel is punctured it is
not necessary to lance the vein - The appropriate capillary tube is held on a 45
angle with one end of the tube at the edge of the
drop of blood collecting on the leg surface
70Saphenous Vein
- Approximately 300 µl of blood can be collected
from an adult rat using this method - Flex the rats foot to reduce the flow of blood
- Slight pressure is then applied to the puncture
site with a gauze compress until hemostasis occurs
71Intracardiac Puncture
- This procedure must be performed under deep
anesthesia and is a NON-SURVIVAL procedure - Once the animal is anesthetized, prep the chest
with 70 ethanol - Insert the needle at the base of the sternum,
bevel up, into the thoracic cavity at a 15-20
angle directed just to the left of midline
- Aspirate slowly
- If blood begins to flow into the syringe,
continue to aspirate with steady, even pressure - If no blood is seen reposition the needle and try
again
72Intracardiac Puncture
- Once the required blood volume is collected, the
rat is euthanized while still deeply anesthetized - Up to 10 milliliters or more of blood may be
collected from an adult rat using this method
73Anesthesia/Analgesia
- This module will provide a brief introduction to
analgesia and anesthesia in the rat - Your veterinarian or ARF personnel should always
be consulted for advice on selection and
administration of analgesia or anesthesia - The use of analgesics and/or anesthetics must be
described in your approved animal use protocol - There is a drug formulary on the OACC website
that lists drugs, dosages, and uses for various
species
74Anesthesia/Analgesia
- Injectables used for anesthesia and analgesia
- Typically given IP or IM but may be given SQ
- It is important to weigh the rat prior to dosing
with an injectable anesthetic to avoid over or
under dosing the animal
75Anesthesia/Analgesia
- Topicals as an adjunct to, or in lieu of
injectable analgesics, topical anesthetics may
also be used - These long-acting agents are painted or dropped
into the surgical wound before the skin is closed - To facilitate retro-orbital sinus blood
collection, an opthalmic anesthetic is used as a
topical analgesic
76Anesthesia/Analgesia
- Inhalants the most commonly used inhalant at
UNM is isoflurane - Isoflurane is administered in 10002 - induction
concentrations of isoflurane are 3-4 and
maintenance concentrations are 1.25-1.75 - Inhalant anesthetics must be used with a
scavenging device - Contact the veterinarian for further training in
the appropriate use of the anesthesia machines
available at UNM
77Monitoring
- Anesthetized animals must be monitored closely
during the procedure to assure that they are
maintained in the proper anesthetic plane - If the plane is too light the animals may move or
struggle - If the plane is too deep the animals may die
- The plane can be assessed by pinching the toe,
tail, or ear of the animals - Any reaction from the animal indicates that the
anesthesia is too light and additional anesthesia
should be given
78Monitoring
- The respiration and color of the mucous membranes
and exposed tissue of the animal should also be
closely monitored - The respiration rate should be even
- An increase in respiration indicates that the
anesthesia is too light - A deep, shallow, decreased or irregular
respiration indicates that the anesthesia is too
deep
79Monitoring
- The color of the mucous membranes and exposed
tissues should be bright pink to red - Dusky grey or blue color is indicative of an
anesthetic plane that is too deep - Core body temperature can also be monitored in
rodents the most common anesthetic complication
is hypothermia - Measures must be taken to control the body
temperature during and after anesthesia
80Recovery
- Place the animal on a clean, dry gauze or paper
towel to avoid contact with the bedding which
may be inadvertently inhaled and result in
asphyxiation - Once the animal has reached sternal recumbency
and appears to making a normal recovery, it may
be returned to the animal holding area - Animals should be watched for several days
following a procedure
81Euthanasia
- The definition of euthanasia is the intentional
induction of a painless death - The veterinarian should always be consulted for
advice on selection and administration of
euthanasia agents - The euthanasia method must be fully described in
your approved animal use protocol
82Euthanasia C02
- Compressed carbon dioxide gas is the only
recommended source of C02 for euthanasia - Carbon dioxide generated from dry ice is NOT
acceptable - With an animal in a chamber, an optimal flow rate
should displace 10-20 of the chamber volume per
minute until the mouse is unconscious
This flow rate is associated with a rapid loss of
consciousness and minimal distress to the animal
83Euthanasia C02
- Once the animal is unconscious the flow rate can
be decreased - Gas flow should be maintained for at least 1
minute following apparent clinical death - Death should be verified by the absence of the
heartbeat, performing cervical dislocation, or
perforating the diaphragm prior to disposal of
the animal
84Euthanasia Injectable Inhalant
- Injectable anesthetics can also be used for
euthanasia when administered at higher doses - Barbituate anesthetics produce rapid and humane
euthanasia when injected IP - Halothane is the most effective inhalant
anesthetic for euthanasia, but isoflurane can
also be used - Inhalants are best utilized with the open drop
method using a closed receptacle containing
cotton or a gauze soaked with the liquid - You must prevent direct contact of the animal
with the liquid anesthetic
85Euthanasia Physical
- Cervical dislocation or decapitation, when
properly performed, is a humane method of
euthanasia - Cervical dislocation can only be performed on
small rats (lt125gms) - Animals MUST be anesthetized prior to cervical
dislocation or decapitation unless scientifically
justified and approved by the IACUC - Fetuses and neonates are resistant to many
methods of euthanasia and special considerations
must be given to this age group
86This Concludes Module 4 Basic Biomethodology
for Laboratory Mice
- Please download the exam, complete it, then
e-mail it to KMirowsky_at_salud.unm.edu