Wiola

1
GROUP 4

• Wiola
• Lucie
• Ashraf
• Jaime

2
ANALYSIS OF THE UNKNOWN SEQUENCE

• GCACTTGGTGGCCACATGAATGTTCACAGAAGAGACAGAGCAAGACTCA
  GATTACAACAGTCTCCATCATCATCTTCAACACCTTCTCCTCCTTACCCT
  AACCCTAATTACTCTTACTCAACCATGGCAAACTCTCCTCCTCCTCATCA
  TTCTCCTCTAACCCTATTTCCAACCCTTTCTCCTCCATCCTCACCAAGAT
  ATAGGGCAGGTTTGATCCGTTCCTTGAGCCCCAAGTCAAAA
• Analysis of the sequence using
• BLAST
• E-value 6.7e-136

At3g23130
3
Role of Superman zinc finger gene

• SUP gene plays an important role in normal flower
  development, it acts as a regulator of floral
  homeotic genes
• Mutations of SUP is causing formation of extra
  stamens, which form at the expense of the central
  carpels, Bowman et al. (1992)

4
Superman zinc finger gene At3g23130

• This gene can be found on Chromosome 3 at
  location 8,242,511-8,243,125.

5
Superman zinc finger protein Q38895
6
Superman zinc finger protein Q38895

• A zinc finger is a large superfamily of protein
  domains that can bind to DNA.
• Superman controls the boundary between stamen and
  carpel development of the flower in Arabidopsis
  thaliana.
• http//www.cbs.dtu.dk/cgi-bin/nph-webface?jobidcp
  hmodels,47B2BFA803300D12optnone

CATH Protein structure classification
7
Protein analysis
Database of protein families and domains - PROSITE
InterPro - Ensembl
8
Negative prediction of transmembrane domains
(TMpred)
9
Genespring and SUP
General information
Similar genes
10
SOAPLab analysis of At3g23130