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Wheat Wide Crossing

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3RL, 3RS. 4RL(7DS) 5RS. 6RL. Trials last season to assess yield potential, drought tolerance (water-use efficiency), nitrogen-use efficiency, phosphorous-use efficiency. – PowerPoint PPT presentation

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Title: Wheat Wide Crossing


1
Wheat Wide Crossing
  • Essentially 2 types
  • 1. Introgression of variation from progenitors or
    species with at least one common genome
  • Normal recombination on common chromosomes
  • Re-synthethized (synthetic) hexaploid wheat
  • 2. Crosses with more distant relatives
  • No recombination with wheat chromosomes
  • Aim to develop translocations
  • Transmission as a single unit
  • Potential problems with linkage drag
  • Leymus racemosus, Rye, Agropyron/Aegilops

2
Priority Pre-Breeding Targets
  • Rusts
  • Septoria
  • Spot blotch
  • FHB
  • Yield potential
  • Water-use efficiency
  • Rainfed and irrigated systems
  • Nutrient-use efficiency
  • cost saving and environmental benefit
  • better root systems
  • Heat tolerance

3
Synthetic hexaploid wheats
  • Allelic variation can be recovered by going back
    to the wild ancestors of cultivated wheat
  • Since the early 1990s, CIMMYT has produced over
    1100 synthetic hexaploids (850 tauschii accns)
  • Aimed to increase genetic diversity especially on
    the D-genome
  • Now making synthetics to introduce A B genome
    variation from wild and cultivated emmers.


4
Synthetic Hexaploids
  • Variation found for a large range of traits
  • Rusts
  • Septoria tritici
  • Fusarium Head Blight
  • Spot Blotch
  • Drought tolerance
  • Grain quality (processing)
  • Grain nutritional quality
  • Used in breeding at CIMMYT and distributed widely
    around the world
  • Little genetic analysis initially

5
Useful traits were transferred via crossing and
selection to elite CIMMYT breeding lines-
derived synthetics
6
Performance of Synthetic Derived Lines in
Semi-Arid International Yield Trial (SAWYT)
7
(No Transcript)
8
Derived synthetics released in Spain and China (5
varieties)
9
Synth-derived lines extract more water from
deeper in soil profile
10
Associations among CIMMYT elite materials
genotyped with 38 SSRs
Synthetic derivatives CIMMYT breeding lines or
different ME World wide wheats
11
Current focus- synthetics
How do we identify the best primaries for further
crosses?
  • Direct screening for yield is difficult due to
    height and phenology
  • Screening for yield, drought and heat tolerance
    or components (physiological traits).
  • Association studies on SAWYT based on DARTs and
    international trial data- contribution of the D
    genome?
  • Test crosses- DH or bulked F3-F4s selected for
    uniform height and flowering time Breeding value
  • Haplotyping of synthetics with good disease
    resistances
  • Do we need to make more synthetics?
  • What variation do we need?

12
Current focus- synthetics
How do we identify the best primaries for further
crosses?
  • Direct screening for yield is difficult due to
    height and phenology
  • Test crosses- DH or inbreds (F3-F4s?) selected
    for uniform height and flowering time ? Breeding
    value
  • Multiple backgrounds
  • Large effort so need to test theory on smaller
    scale first.
  • Test theory with existing DHs
  • Make selections of semidwarf, early flowering
    lines
  • Test yield performance in different environments
  • 5 populations- synthetic x Opata

13
Breeding Value of Primary Synthetics
Synthetic x Opata Populations
Opata
Roelfs
Height (cm)
Syn 5
Syn 2
Syn 4
Syn 3
Syn 6
Syn 1
Flowering (days)
14
Breeding Value of Primary Synthetics
Synthetic x Opata Populations
Opata
Roelfs
Yield- drought
LSD0.05 0.89
Syn 5
Syn 2
Syn 4
Syn 3
Syn 6
Syn 1
LSD0.05 1.23
Yield- full irrign
15
Current focus- synthetics
  • Haplotyping for FHB and STB
  • FHB
  • 17 fusarium resistance markers
  • 71 resistant derived synthetics
  • Sumai 3 QTL 3BS in 57 lines
  • Wuhan QTL on 2D in 5 lines
  • STB
  • 15 markers for 14 of the 15 reported genes
  • 2 genes are coming from Tauschii
  • Stb5 from synthetic source in low of lines
  • Stb8 (coming from tauschii 219 reported in the
    ITMI population) in approx 50
  • An indication of the presence of novel variation
    in many primary and derived synthetics for both
    STB and FHB.

16
Wheat Rye Introgressions
  • Wheat and Rye have grown together for millenia
  • In Afghanistan rye is Gandam dora

plant that infests barley or wheat
  • Rye a common weed of wheat, cultivated later,
    further north
  • First deliberate interspecific wheat crosses were
    with rye in 1870s
  • Triticale
  • 1BL.1RS translocation
  • Natural wheat-rye introgressions

17
Wheat-Rye Translocations Why Rye?
  • Success of 1BL.1RS translocation
  • One translocation from Petkus rye dating to 1930s
  • Widespread around the world
  • Yield increase and stability
  • Rye is a cultivated, actively bred species
  • Yield performance
  • Rye and triticale have a range of superior
    attributes cf wheat
  • Acid soils tolerance, drought tolerance,
    phosphorous-use efficiency
  • Many introgression stocks
  • Good foundation for simple, rapid introgression
    of new variation
  • Good molecular tools
  • Characterization tracking of introgressions

18
Wheat-Rye Translocations Why Rye?
  • Have 9/14 chrom arms at BC7 stage in Pavon 76
    breadwheat
  • 1RL, 1RS
  • 2RL, 2RS
  • 3RL, 3RS
  • 4RL(7DS)
  • 5RS
  • 6RL
  • Trials last season to assess yield potential,
    drought tolerance (water-use efficiency),
    nitrogen-use efficiency, phosphorous-use
    efficiency
  • Aim for all rye chromosome arms as single
    translocations
  • Smaller segments a longer term aim

19
Rapid introgression and evaluation
Elite wheat translocation
Rye
X
Select chrom number, presence of 3RS, recomb on
3RS
20, 3DL.3RS
1R-7R
F1 x
Recomb 3RS
Self
20, 3DL.3RS (recomb)
21
Field trials
20
Leaf Rust Reaction of Pavon-Rye Translocation
lines (BC7 inbreds)
Sus
Res
21
Yield of Pavon-Rye Translocation lines (BC7
inbreds)
LSD0.05 0.73
Yield- drought
LSD0.05 0.91
Yield- full irrign
22
Natural Rye Introgressions
  • Wheat and rye in mixed stands for millenia
  • Rye a weed of wheat, cultivated later, further
    north
  • Accounts of Vavilov
  • Barbela landrace- deliberate mixture
  • Multiple small interstitial introgressions (ISH)
  • Present in other Landraces?
  • Small introgression segments
  • Greater opportunity to identify with more precise
    molecular tools
  • Dispersed repeated element
  • High density maps (SSRs, SNPs)
  • Genomic sequencing

23
Natural Rye Introgressions
  • Barbela wheat landrace with rye insertions
  • 2DL2R
  • From Ribeiro-Carvalho et al 2001
  • 2DS.2DL.2RL(5) (Ribeiro-Carvalho et al 2001)
  • 5DS small rye terminal insert (Silva et al
    1996)
  • Unknown with small terminal insert
    (Ribeiro-Carvalho et al 2001)
  • Unknown with terminal and intercalary rye
    segments (Ribeiro-Carvalho et al 2001)

24
Natural Rye Introgressions
  • Barbela wheat landrace with rye insertions
  • Only small amount of the available Barbela
    collection sampled
  • Good chance of finding small segments on other
    chromosomes in Barbela and other landraces
  • Better molecular tools available
  • Screening of Barbela and other landraces an
    important focus of future rye activities

25
Nitrogen-Use Efficiency from Leymus racemosus
Other NUE mechanisms?
Plant uptake N2O Pollution
(greenhouse gas)
NH4 NO2- NO3- Non-mobile Highly
mobile in soil in soil
BNI (Biolocical nitrification inhibition)
Nitrosomonas europaea (Ammonia-oxidizing bacterium
26
NUE from L. racemosus
Stock racemosus chromosome racemosus chromosome Homol gp in wheat BNIa DW/plant NH4 tolb
L. racemosus 31.55 3.61 T
Chinese Spring 6.39 4.52 S
DALrn Lrn 3 and 7 24.57 3.15 S
DALrJ LrJ 7 13.47 2.66 S
DALrI LrI 5 13.02 2.07 S
DALrl Lrl 2 6.4 2.15 S
DALrk Lrk 6 5.5 2.75 S
DALrF LrF 4 4.12 1.84 S
DALrH LrH 3 3.65 2.24 S
DA2Lr1 2Lr1 2 3.16 2.04 S
DA5Lr1 5Lr1 5 6.55 2.72 S
DtA7Lr1-1 7Lr1-1 7 6.38 3.38 T
DtA7Lr1-2 7Lr1-2 7 4.9 1.64 S
DA disomic addition, Dt ditelosomic addition of
L. racemosus chromosomes to/with Chinese Spring
chromosomes. a Root exudate collected using 1 mM
NH4Cl. b Tolerance score based on the appearance
of chlorosis symptoms, where chlorosis was
considered as a sign of sensitivity
to assimilation of N in NHþ 4 form.
27
L. racemosus ongoing activities
  • Field trials in Chinese Spring background
  • Confirm BNI in field
  • Compare yield performance under low and high N
  • Nutrient-use efficiency (NP)
  • Backcrossing into better backgrounds
  • Generating new translocations (some in Pavon
    background)
  • Markers
  • Define break point, retain key wheat alleles
  • High-throughput marker for breeding

28
  • Thankyou
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