All Time

Recommended

Sequencing, Sequence Alignment & Software Lushan Wang, Shandong University

| PowerPoint PPT presentation | free to view
A: To sequence a DNA molecule is to obtain the string of bases that it contains. ... assembly: detect 'tangles' indicative of repeats (Pevzner, Tang, Waterman 2001) ...

| PowerPoint PPT presentation | free to download
... piece of sequence you want to copy. Insert the sequence into a ... The cDNA sequence represents what is expressed in a particular cell at a particular time ...

| PowerPoint PPT presentation | free to view
Sequencing and Sequence Alignment CIS 667 Bioinformatics Spring 2004 Protein Sequencing Before DNA sequencing, protein sequencing was common Sanger won a Nobel prize ...

| PowerPoint PPT presentation | free to view
Title: Traveling Salesman Problem and Multiple Sequence Alignment Author: weiwei Last modified by: rwr Created Date: 1/22/2003 9:38:06 PM Document presentation format

| PowerPoint PPT presentation | free to download
cs570 Artificial Intelligence Chapter 3 Solving Problems By Searching and Constraint Satisfaction Problem 2000. 3. 20. Overview Solving Problem by ...

| PowerPoint PPT presentation | free to view
Title: Assembling Sequences using additional information Author: Pre-installed Last modified by: Pre-installed Created Date: 9/16/1999 2:41:41 PM Document ...

| PowerPoint PPT presentation | free to download
Given certain markers (small but precisely defined sequences) physical map ... Cloning ... Goal: produce large quantities of a DNA molecule without cloning. ...

| PowerPoint PPT presentation | free to view
GLOBAL PAIRWISE ALIGNMENT GLOBAL ALIGNMENT OF: 2 NUCLEOTIDE SEQUENCES OR 2 AMINO-ACID SEQUENCES * To derive a mutational probability matrix for a protein sequence ...

| PowerPoint PPT presentation | free to download
the basic elements of a problem definition. initial state. operator (or successor function S) ... On holiday in Romania: currently in Arad. Flight leaves ...

| PowerPoint PPT presentation | free to view
Its structure corresponds to the structure of problem solving in two important ways: ... Suppose we are trying to prove a math theorem.We can prove a lemma. ...

| PowerPoint PPT presentation | free to view
Minimize the number of paint color changes ... Initial solutions for problem RAF-EP-(ENP) will have the minimum number of paint color changes. ...

| PowerPoint PPT presentation | free to view
... minimizing sequence tends to an infinitely-fast-oscillating limit. UConn, April ... There are infinitely many local minima; each corresponds to an equilibrium. ...

| PowerPoint PPT presentation | free to download
Therefore, there is a requirement to group vehicles together by paint color. Problem statement ... Minimize the number of paint color changes ...

| PowerPoint PPT presentation | free to download
CrossWA: A new approach of combining pairwise and three-sequence alignments to improve the accuracy for highly divergent sequence alignment Che-Lun Hung, Chun-Yuan ...

| PowerPoint PPT presentation | free to view
Arc-annotated sequence usage. The secondary and tertiary structure of RNA ... Alas, I know little about dynamic programming -but I know divide-and- conquer ...

| PowerPoint PPT presentation | free to view
Predict protein structure using amino acid interaction preferences. Result ... Interactions between amino acids from the sequence are admitted into the score function ...

| PowerPoint PPT presentation | free to view
CrossWA: A new approach of combining pairwise and three-sequence alignments to improve the accuracy for highly divergent sequence alignment Che-Lun Hung, Chun-Yuan ...

| PowerPoint PPT presentation | free to view
... Symbolic Sequences for String-Matching, Pattern-Recognition and Grammar Detection ... to make fast non-exact string matching and pattern recognition. ...

| PowerPoint PPT presentation | free to download
Bioinformatics. Genome Sequencing. Research Problem. Fuzzy Logic. Ongoing ... Bioinformatics ... important first step in many bioinformatics applications ...

| PowerPoint PPT presentation | free to download
Objectives: At the end of the study, the student must be able to: define arithmetic sequence; know if a sequence is an arithmetic progression; apply arithmetic ...

| PowerPoint PPT presentation | free to download
Arithmetic Sequence: ... Multiplier Pod Problem Week Sales 0 1 2 3 4 n 100 115 132.25 152.09 174.9 = 100.1.15.1.15 = 100.1.15 = 100.1.15.1.15.1.15 = 100.1.15.1 ...

| PowerPoint PPT presentation | free to download
Be aware of the importance of sequence searching and sequence alignment in biology and medicine ... every 20 residues the alignment is suspicious. 29. Lecture ...

| PowerPoint PPT presentation | free to view
Solving problems by searching Chapter 3 in AIMA Problem Solving Rational agents need to perform sequences of actions in order to achieve goals.

| PowerPoint PPT presentation | free to download
Nawwaf Kharma * * * Programming as Problem Solving with Applied Algorithms Algorithm Design as Instruction selection, configuration and sequencing The intimate ...

| PowerPoint PPT presentation | free to download
3-6 Arithmetic Sequences Warm Up Problem of the Day Lesson Presentation Course 3

| PowerPoint PPT presentation | free to download
SEQUENCES. SORTING. Sorting. Input: (unsorted) sequence of n elements a1, a2, ..., an ... What if you had 10,000 unsorted records and each record had a value between ...

| PowerPoint PPT presentation | free to view
Most genome will be sequenced and can be sequenced; few problem are unsolvable. ... Assembly: Process of taking raw single-pass reads into ...

| PowerPoint PPT presentation | free to view
Sequence Alignment

| PowerPoint PPT presentation | free to download
sequence alignment aggctatcacctgacctccaggccgatgccc tagctatcacgaccgcggtcgatttgcccgac-aggctatcacctgacctccaggccga--tgccc---tag-ctatcac--gaccgc--ggtcgatttgcccgac

| PowerPoint PPT presentation | free to download
Decoding: given a model and an output sequence, what is the most likely state sequence through the model that generated the output? A solution to this problem gives ...

| PowerPoint PPT presentation | free to download
Sequence Alignment

| PowerPoint PPT presentation | free to view
Large number of sequences to search your query sequence against. ... Blast of human beta globin protein against zebra fish. Sample BLAST output (cont'd) ...

| PowerPoint PPT presentation | free to download
Assess ancestry among homologs (sequences with common ancestory) to help in gene ... AA--GATA ... AA--GATA. Alignment scores would be -3, -1, 1, respectively; ...

| PowerPoint PPT presentation | free to download
Algorithms Problem Solving

| PowerPoint PPT presentation | free to download
Order Picking: Pick Sequencing and Batching The Pick Sequencing Problem Given a picking list, sequence the visits to the picking locations so that the overall ...

| PowerPoint PPT presentation | free to download
DNA Sequencing Next few topics DNA Sequencing Sequencing strategies Hierarchical Online (Walking) Whole Genome Shotgun Sequencing Assembly Gene Recognition The ...

| PowerPoint PPT presentation | free to view
Exploit the fact that similar sequences are usually evolutionarily related ... Works well for similar sequences; poorly for divergent. Problems with progressive ...

| PowerPoint PPT presentation | free to view
Sequence Alignment

| PowerPoint PPT presentation | free to download
We can think of these sequences as strings of letters. DNA & RNA: alphabet of 4 letters ... Lemma: T(m,n) 2cmn. Time complexity is linear in size of the problem ...

| PowerPoint PPT presentation | free to view
DNA Sequencing DNA sequencing How we obtain the sequence of nucleotides of a species Which representative of the species? Which human? Answer one: Answer two: it ...

| PowerPoint PPT presentation | free to view
Sequence Listings Sue Wolski ... Where the SL Text File is a Search Tool ... available Open in a text editor that produces files only in ASCII format Such as ...

| PowerPoint PPT presentation | free to download
Geometric Sequences (day 3) Geometric Sequence Objective: To find a formula for the nth term of a geometric sequence & To find specified terms of ...

| PowerPoint PPT presentation | free to view
DNA Sequencing Basic Techniques Project Design Process Improvements Project Size/Type 500 bases 2500 bases 10 kbp 150 kbp 3 Mbp simple repeats BIG 1 locus EST,STS ...

| PowerPoint PPT presentation | free to view
Start at primer (restriction site) Grow DNA chain ... ARD, CRB ? A. R. B. CS262 Lecture 9, Win06, Batzoglou. Sequencing and Fragment Assembly ...

| PowerPoint PPT presentation | free to view
Large number of sequences to search your query sequence against. ... Jukes-Cantor model. Transitions vs transversions. Kimura's 2-parameter model ...

| PowerPoint PPT presentation | free to download
Searches for an action sequence that solves the problem ... If path-cost = number of steps, this degenerates to BFS. Complete and optimal ...

| PowerPoint PPT presentation | free to download
Evidence: mtDNA. Multiregional Evolution ... Proponents of the theory doubt mtDNA and other genetic evidence. DNA Sequencing. Goal: ...

| PowerPoint PPT presentation | free to view
Biological sequence analysis Terry Speed Wald Lecture II, August 8, 2001

| PowerPoint PPT presentation | free to view
Pairwise Sequence Comparison Stat 246, Spring 2002, Week 5,

| PowerPoint PPT presentation | free to download
Multiple Sequence Alignment An alignment of heads Sequence Alignment A way of arranging the primary sequences of DNA, RNA and amino acid to identify the regions of ...

| PowerPoint PPT presentation | free to download
Convex Hull Problem Presented By Erion Lin Outline Convex Hull Problem Voronoi Diagram Fermat Point Outline Convex Hull Problem Voronoi Diagram Fermat Point Convex ...

| PowerPoint PPT presentation | free to download
The Destination Sequenced Distance Vector (DSDV) protocol Dr. R. B. Patel The Routing Problem The property of ad-hoc networks Topology may be quite dynamic No ...

| PowerPoint PPT presentation | free to view
Small Group Activity 1.1 ... The command sequence is a guide to action planning Makes you think before you act. ... decisionmaking is easier when you have the

| PowerPoint PPT presentation | free to view
To introduce a variety of problem solving tools & techniques. ... group, brainstorm for as many different possible names for a hairdressing salon. ...

| PowerPoint PPT presentation | free to view
PAUP Phylip by Joe ... Sequence analysis course Author: pirovano Last modified by: heringa Created Date: 11/2/2005 9:49:40 AM Document presentation format: On ...

| PowerPoint PPT presentation | free to download