Title: Biomedical Informatics: use of information technology and advanced research computing in the practic
1Biomedical Informaticsuse of information
technology and advanced research computing in the
practice of biomedical sciences and medicine
(wikipedia)
- Joel Saltz MD, PhD
- Chair Department of Biomedical Informatics
- The Ohio State University College of Medicine
2Transcontinental Railway The Golden Spike -
Triumph of Standards
3Major Break-of-GaugeTransiberian, Manchurian
Railroad
- Cant always standardize
- Optimize transfer
- Adapt trains
- Move cargo
- Time consuming, expensive
- Can be automated
4Translation Same ideas, different words
5Biomedical Informatics and Middleware
Translates and Integrates Information
Disseminates Information
Brings in Information
6caBIG Application community led effort
- caGrid octopus for caBIG
- OSU-led project
- Ohio State/Rescentris Bioinformatics BRTT laid
groundwork
7caGrid
- Grid Infrastructure for caBIG
- caGrid Components
- Grid Service Graphical Development Toolkit
(Introduce) - Metadata
- Advertisement and Discovery
- Semantic Services
- Workflow
- Security
8caGrid 1.0 Security
- Authentication
- Process of determining whether someone or
something is, in fact, who or what it is declared
to be. - http//en.wikipedia.org/wiki/Authentication
- Authorization
- Process of determining if an authenticated user
may do something on a given resource. - Can User X perform Operation Y on Resource Z?
- http//en.wikipedia.org/wiki/Authorization
- Trust Management
- Supports applications and services in deciding
whether or not signers of digital
credentials/user attributes can be trusted. - Secure Communication
- The ability to guarantee the integrity and/or
privacy of messages between two parties
99
10System Architecture - Virtual PACS
11GridIMAGE
- Query heterogeneous set of DICOM, SQL or caGrid
data services - Select images based on search criteria
- Send images to human reviewer
- Send images to algorithm for CAD or change
detection
12Ongoing Testbed Cooperative Group Collaborations
- ACRIN
- QARC
- ATC
- RTOG
- CALGB
- COG
- NCIA
13Middleware High Resolution 3-D Tissue
Reconstruction
14Woody Hayes Success - it's what you do with
what you've got.
15Thanks!
16caGrid Team
- Ohio State University - Department of BioMedical
Informatics (http//bmi.osu.edu/) - Dave Ervin
- Shannon Hastings
- Tahsin Kurc
- Stephen Langella
- Scott Oster
- Joel Saltz
- Argonne National Lab / University of
Chicago(http//www.globus.org) - William Allcock
- Jarek Gawor
- Ravi Madduri
- Frank Siebenlist
- Michael Wilde
- Duke University
- A. Jamie Cuticchia
- Patrick McConnell
- Georgetown University
- Colin Freas
- Paul A. Kennedy
- Chad La Joie
- SAIC (http//www.saic.com)
- Manav Kher
- Booz Allen Hamilton (http//www.bah.com)
- Arumani Manisundaram
- Michael Keller
- Reechik Chatterjee
17gridCAD Team
- Tony Pan, Joel Saltz, Tahsin Kurc, Stephen
Langella, - Shannon Hastings, Scott Oster, Ashish Sharma,
Metin Gurcan - Department of Biomedical Informatics
- The Ohio State University Medical Center,
Columbus OH - Eliot Siegel, Khan M. Siddiqui
- University of Maryland School of Medicine,
Baltimore, MD
For more information, please contact Tony Pan
(tpan_at_bmi.osu.edu) Dept. of Biomedical
Informatics, The Ohio State University
http//bmi.osu.edu
18Microscopy Image Analysis
- Human Cancer Genetics
- Pamela Wenzel
- Dr. Gustavo Leone
- Dr. Alain deBruin
- Dr. Tony Trimboli
- Jana Opavska
- Biomedical Informatics
- Tony Pan
- Alexandra Gulacy
- Dr. Metin Gurcan
- Dr. Ashish Sharma
- Dr. Kun Huang
- Dr. Joel Saltz
- Computer Science and Engineering
- Raghu Machiraju
- Kishore Mosaliganti
- Randall Ridgway
- Richard Sharp