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genSpace: Exploring Social Networking Metaphors for Scientific Collaborative Work

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Exploring Social Networking Metaphors for Scientific Collaborative Work Gail Kaiser, Swapneel Sheth, Chris Murphy {kaiser, swapneel, cmurphy} _at_ cs.columbia.edu – PowerPoint PPT presentation

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Title: genSpace: Exploring Social Networking Metaphors for Scientific Collaborative Work


1
genSpace Exploring Social Networking Metaphors
for Scientific Collaborative Work
  • Gail Kaiser, Swapneel Sheth, Chris Murphy
  • kaiser, swapneel, cmurphy _at_ cs.columbia.edu
  • Programming Systems Lab
  • Department of Computer Science
  • Columbia University

2
genSpace Goals
  • Prior collaboratories for bioinformatics
    scientists
  • Tool sharing (e.g. BioCoRE from UIUC)?
  • Data sharing (e.g. BSC from PNNL)?
  • Instead, we seek to introduce knowledge sharing
  • What tools / datasets should I use to investigate
    this problem?
  • Who do I know who also uses this tool / dataset?
  • Which tools and datasets work nicely together?
  • Where does this tool / dataset fit in a typical
    workflow?
  • When did I previously use this tool / dataset?
  • How can I get help (from an expert who is online
    right now)?

3
genSpace Goals
  • Social Networking facilitates Collaborative
    Filtering
  • What movies would I like?
  • Who also likes this book?
  • Which food and wine go together?
  • Where does this song fit in the playlist?
  • When was this restaurant last reviewed?
  • How can I get help about ltxxxgt?
  • We investigate Social Networking Modelsas an
    approach to Scientific Knowledge Sharing
  • We are implementing a prototype for geWorkbench

4
genSpace Technical Details
  • genSpace client is a geWorkbench component,
    separate centralized genSpace server
  • Instrument geWorkbench to capture and
    recordanalysis events
  • Aggregate event logs for communities of users
  • Data-mine event patterns
  • Automatically construct networks of similar
    users
  • Automatically construct implicit
    workflowsconsisting of sequences of analysis
    tools
  • Query via Instant Messaging (IM) bots
  • Visualize networks and workflows

5
genSpace Architecture
6
genSpace plugin for geWorkbench
7
IM based query interface (jclaim)
8
Single Workflow Visualization
9
Workflow Relationship Visualization
10
genSpace Research Questions
  • We do not aim to (directly) produce new results
    answering bioinformatics research questions
  • Instead, we seek to make it easier for
    bioinformaticsresearchers to find answers to
    their own questions
  • We do, however, seek to produce (direct) new
    research results of interest in software systems
  • Adapting a social metaphor for collaborative
    work
  • Data mining implicit workflows
  • Publish/subscribe based on implicit participation
    intool and dataset use communities
  • Security/privacy implications and amelioration

11
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