Genome Browsing

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Genome Browsing

• with the Ensembl Genome Browser

http//www.ensembl.org/
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Genome Browsers
UCSC
NCBI
Ensembl
http//genome.ucsc.edu/
http//www.ensembl.org/
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Ensembl Genome Browser
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Human Genome
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MapView
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ContigView - Overview
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CytoView
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ContigView - Detailed view
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GeneView
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GeneSpliceView
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GeneSNPView
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GeneView ? TransView/ProtView
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TransView
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TransView (continued)
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ProtView
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ProtView - Sequence
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ProtView ? DomainView/FamilyView
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DomainView
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FamilyView
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ContigView ? FeatureView
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FeatureView
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MapView ? SyntenyView
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SyntenyView
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ContigView ? MultiContigView
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MultiContigView - Overview
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MultiContigView Detailed view
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Other Ensembl Features

• Blast searching
• Data mining (Biomart)
• Select data based on advanced criteria (e.g.
  genome location, protein domains, functional
  annotation, expression, orthology, etc.)
• Retrieve in various formats (HTML, Excel, text)
• Data downloading (FTP)