SELTMANN2, Katja RICCARDI3, Gregory A. RONQUIST2, Fredrik MAST1, Austin WINNER2, Steve JAMMIGUMPULA2

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Morphbank AToL Update characters, XML, object
relationships, user defined fields and MyManager
(www.morphbank.net)
SELTMANN2, Katja RICCARDI3, Gregory A.
RONQUIST2, Fredrik MAST1, Austin WINNER2,
Steve JAMMIGUMPULA2, Neelima PAUL2, Debbie
MANEVA-JAKIMOSKA2, Karolina DEANS, Andy
PRIETO-MARQUEZ1,, Albert BLANCO, Wilfredo
GAITROS4, David ERICKSON1, Gregory M. and
GAITROS, Cynthia 1Department of Biological
Science, Florida State University, Tallahassee,
FL 32306-1100, USA. 2School of Computational
Science, Florida State University, Tallahassee,
FL 32306-4120, USA. 3College of Information,
Florida State University, Tallahassee, FL
32306-4530, USA. 4Department of Computer
Science, Florida State University, Tallahassee,
FL 32306-4530, USA. Morphbank Team, Department of
Computational Sciences, Florida State University
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Morphbank 2.7
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Morphbank 2.7 - Records
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Images hosted by Morphbank
E. Grissell, M. E. Schauff Mike Gates
http//www.morphbank.net/?id111266imgTypejpeg
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Linking Online Papers
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Linking Online Papers to Collections
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Morphbank 2.7 - Collections
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Morphbank 2.7 -MyManager
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related objects
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Morphbank 2.7 - related objects

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Morphbank 2.7 - Character State Annotations

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(No Transcript)
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Morphbank XML
(http//morphbank2.scs.fsu.edu8080/mb/)
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Morphbank 2.7 - Collections
(in mb)
http//www.morphbank.net/?id139906imgTypejpeg
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Morphbank 2.7 - Collection (but not in mb)
http//www.morphbank.net/?id139906imgTypejpeg
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mx managing taxonomic data
http//hymenoptera.tamu.edu/wiki/
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http//hymenoptera.tamu.edu/wiki/
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mx managing taxonomic data add image to chr
state
http//hymenoptera.tamu.edu/wiki/
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mx managing taxonomic data public view
http//codex.begoniasociety.org/
http//hymenoptera.tamu.edu/wiki/
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Morphbank moving in the direction of
Image repository Any object may be related to
any other object Morphbank object linked to
another Morphbank object External references
associated with any object The collection as a
collaboration environment any object may belong
to a collection Information exposed through XML,
import soon
http//hymenoptera.tamu.edu/wiki/
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Acknowledgments

• National Science Foundation
• - Biological Databases and Informatics (BDI)
  Program
• (Grant DBI-0446224) for Morphbank
• - PEET and DDIG Programs
  (DEB-041544081 and DEB-0328922) for mx
• Florida State University
• - School of Computational Science
• - College of Information
• - Department of Computer Science
• - Department of Biological Science
• - Department of Mathematics
• National Evolutionary Synthesis Center
  (NESCent)
• Plant Collections Project
• Swedish Research Council
• Uppsala University, Sweden
• Morphbank biologists and collaborators AToL,
  PEET, PBI, MX, HERBIS, CBG,SCAMIT, etc
• TDWG supporters

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Morphbank XML
(http//morphbank2.scs.fsu.edu8080/mb/)
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Google Base PlantCollectionstm
Other Atom Sources
UI
UI
Google Base
Atom
Cache
UI
Engine
morphbank
Schema
Atom
Push
Staging Cache
Source
ProtocolService
Botanical garden
Dave Vieglais, Biodiversity Research Center,
University of Kansas
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Plant Collectionstm
Need a database? Why not Google Base.
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Plant Collectionstm
Need a database? Why not Google Base.
http//base.google.com/
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Google Base PlantCollectionstm
Other Atom Sources
UI
UI
Google Base
Atom
Cache
UI
Engine
morphbank
Schema
Atom
Push
Staging Cache
Source
ProtocolService
Botanical garden
Dave Vieglais, Biodiversity Research Center,
University of Kansas
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Morphbank 2.7-Search My Manager for Ids
http//www.morphbank.net/Show/?id111266
http//www.morphbank.net/?id111266imgTypejpeg
http//www.hymatol.org/Chalcidkey/
E. Grissell, M. E. Schauff Mike Gates
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Morphbank 2.7 -Annotations
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(a good host)
Records with Unique Ids
Records added to increase value
Upload/add these things
Links
OTU
base url
id
http//www.morphbank.net/?id80305
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mx managing taxonomic data
http//hymenoptera.tamu.edu/wiki/index.php/Main_Pa
ge
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How to parse XML?