Valgumotiivid ja valguperekonnad

1
Valgumotiivid ja valguperekonnad

• KOIT ARRO

2
Sequence-motif meetodid

• BLOCKS http//www.blocks.fhcrc.org/
• eMOTIF http//elucidate.stanford.edu/emotif/
• InterPro http//www.ebi.ac.uk/interpro/
• Pfam http//www.sanger.ac.uk/Pfam/
• PRINTS http//www.biochem.ucl.ac.uk/bsm/dbbrow
  ser/PRINTS/PRINTS.html
• PROSITE http//www.expasy.ch/prosite/
• SMART http//SMART.embl-heidelberg.de/

3
Sequence-cluster andmebaasid

• CluSTr http//www.ebi.ac.uk/clustr/
• DOMO http//www.infobiogen.fr/services/domo
• PIR-ALN http//pir.georgetown.edu/pirwww/dbinfo/p
  iraln.html
• ProClass http//pir.georgetown.edu/gfserver/procl
  ass.html
• ProDom http//www.toulouse.inra.fr/prodom.html
• Protein Information Resource (PIR)
  http//pir.georgetown.edu/pirwww/pirhome.shtm
  l
• PROT-FAM http//pir.georgetown.edu/pirwww/dbinfo/p
  rotfam.html
• ProtoMap http//www.protomap.cs.huji.ac.il/
• SBASE http//sbase.abc.hu/sbase
• SYSTERS http//www.dkfz-heidelberg.de/tbi/service
  s/cluster/systersform

4
Structural alignment and cluster databases

• Protein Structure Classification (CATH)
  http//www.biochem.ucl.ac.uk/bsm/cath/
• Dali Domain Dictionary (DDD)
• http//www.embl-ebi.ac.uk/dali/domain/
• Families of Structurally Similar Proteins (FSSP)
  http//www.ebi.ac.uk/dali/fssp/
• Homology-derived Secondary Structure of Proteins
  (HSSP) http//www.sander.ebi.ac.uk/hssp/
• I-sites library http//isites.bio.rpi.edu/
• Protein Data Bank (PDB)
• http//pdb-browsers.ebi.ac.uk//index.shtml
• SCOP (Structural Classification of Proteins)
  http//scop.mrc-lmb.cam.ac.uk/scop/