Job submission and automated installation of ARC grid Runtime Environments

1
Job submission andautomated installation ofARC
grid Runtime Environments
2
Legend
User shell input
Observation in Janitor log file
3
Create proxy certificate
grid-proxy-init Your identity /OGermanGrid/OUUn
iLuebeck/CNDaniel Bayer Enter GRID pass phrase
for this identity Creating proxy
........................................
Done Your proxy is valid until Wed Nov 7
044302 2007
4
Job submission
ngsub -c grid-dev.inb.uni-luebeck.de
test.xrsl Job wurde submitted mit Job
ID gsiftp//grid-dev.inb.uni-luebeck.de
2811/jobs/311481194365031439244889
(executable "run.sh" )? (arguments
"weka.classifiers.trees.J48" "-t"
"weather.arff")? ("inputfiles" ("weather.arff"
"" ))? ("stderr" "stderr" )? ("stdout"
"stdout" )? ("gmlog" "gmlog" )? ("runtimeenviron
ment" "APPS/BIO/WEKA-3.4.10")?
5
Submitting job job registration
registering new job (APPS/BIO/WEKA-3.4.10)? sucess
fully registered job
6
Preparing Job dependency download
use basesystem "debianetch_tar" for dynamically
installed rte installing package
http//dre.knowarc.eu8080/dre/jre_1.5.0.10-1.tar.
gz
7
Preparing Job dependency installation
Installing /tmp/jre_1_bNCeM5PY_.5.0.10-1.tar.gz S
uccessfully installed "/tmp/jre_1_bNCeM5PY_.5.0.10
-1.tar.gz" in "/grid/runtime/janitor-dev/jre__MbMi
NikwGG"
8
Preparing job package installation
installing package http//dre.knowarc.eu8080/dre/
weka-3.4.10.tar.gz Installing /tmp/weka-3_w7LN4t1x
_.4.10.tar.gz Successfully installed
"/tmp/weka-3_w7LN4t1x_.4.10.tar.gz" in
"/grid/runtime/janitor-dev/weka_5onnE2YOhH"
9
Preparing job initialisaition completed
sucessfully initialized job
10
Jobs are registered to REs
perl Janitor.pl info Registered Jobs
311481194365031439244889 - rte
APPS/BIO/WEKA-3.4.10 - state INITIALIZED
- age 5 seconds Locally Installed RTEs
APPS/BIO/LAGAN-1.2 APPS/BIO/TFBS-0.5.0
APPS/BIO/TCOFFEE-2.5 APPS/STATISTICS/R-2.4.1 K
nown Dynamic RTEs APPS/BIO/WEKA-3.4.10 -
state INSTALLED_A - used
311481194365031439244889
11
Communicating to Information System
connection from 127.0.0.158816
12
Finishing Unassign job from RE
removing job 3168211943652401030747187
3168211943652401030747187 removed
13
User's interest RE state
perl Janitor.pl info Registered Jobs Locally
Installed RTEs APPS/BIO/LAGAN-1.2
APPS/BIO/TFBS-0.5.0 APPS/BIO/TCOFFEE-2.5
APPS/STATISTICS/R-2.4.1 Known Dynamic RTEs
APPS/BIO/WEKA-3.4.10 - state INSTALLED_A
14
User Collect data
ngget -a Ergebnisse werden abgelegt unter
/nfshome/bayer/arbeit/svn/grid/weka/3.4.10/test/
3168211943652401030747187 Jobs bearbeitet
1, erfolgreich heruntergeladen 1
15
Job successful dynamic RE validation
perl Janitor.pl setstate VALIDATED
APPS/BIO/WEKA-3.4.10
16
Job successful dynamic RE validated
perl Janitor.pl info Registered Jobs Locally
Installed RTEs APPS/BIO/LAGAN-1.2
APPS/BIO/TFBS-0.5.0 APPS/BIO/TCOFFEE-2.5
APPS/STATISTICS/R-2.4.1 Known Dynamic RTEs
APPS/BIO/WEKA-3.4.10 - state VALIDATED
17
Clean up
perl Janitor.pl setstate REMOVAL_PENDING
APPS/BIO/WEKA-3.4.10
18
Clean up
perl Janitor.pl info Registered Jobs Locally
Installed RTEs APPS/BIO/LAGAN-1.2
APPS/BIO/TFBS-0.5.0 APPS/BIO/TCOFFEE-2.5
APPS/STATISTICS/R-2.4.1 Known Dynamic RTEs
APPS/BIO/WEKA-3.4.10 - state
REMOVAL_PENDING perl Janitor.pl sweep